Destruction Box Motif (D box) Finder


This is a WWW service for identification of putative D box motif in sequences.


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A Little About Destruction Box

Proteolysis by ubiquitin and 26S proteasome pathway is a fundamental mechanism for protein turnover, cell cycle control and signal transudation. The ubiquitin pathway is a multi-step process in which an ubiquitin molecule is activated by an E1 enzyme, transferred to an E2 enzyme, and then covalently attached to the protein substrate either directly or in conjunction with E3 enzyme (ubiquitin ligase). Proteins destined to be degraded are subject to multiple rounds of ubiquitin attachment and are then proteolyzed by the 26S proteasome. E3 enzymes are involved in protein substrate recognition and thereby confer specificity to the ubiqitination reaction.

The anaphase promoting complex (APC), or cyclosome, is a multi-subunit E3 protein. APC is responsible for ubiquitination of cell regulators at the metaphase - anaphase and mitosis - G1 transitions. Two degradation motifs have been identified in APC substrates: destruction box (D - box) and KEN box. Most APC substrates have D box and some have either a KEN box or both D and KEN boxes. In some cases two D boxes appear in the same protein.


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This project was created by: Dana Reichmann #, Dr. Shmuel Pietrokovski # and Dr.Michael Brandies *

# Department of Molecular Genetics,the Weizmann Institute of Science, Rehovot, Israel

* Department of Genetics,Hebrew University of Jerusalem,Israel


For comments and questions email to Shmuel Pietrokovski