GeneNote

• Itai Yanai, Hila Benjamin, Michael Shmoish, Vered Chalifa-Caspi, Maxim Shklar, Ron Ophir, Arren Bar-Even, Shirley Horn-Saban, Marilyn Safran, Eytan Domany, Doron Lancet, and Orit Shmueli Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification Bioinformatics 21, 5: 650-659 (2005).[ PDF ]
  [ Supplementary material: Table S1 ],[ Supplementary material: Table S2 ],
  [ Supplementary material: Table S3 ],[ Supplementary material: Table S4 ]



• Shmueli, O., Horn-Saban, S., Chalifa-Caspi, V., Shmoish, M., Ophir, R., Benjamin-Rodrig, H., Safran, M., Domany, E., and Lancet, D. GeneNote: Whole genome expression profiles in normal human tissues Comptes Rendus Biologies 326, 10-11:1067-1072 (2003).
(Publication to cite) [ PDF ]

GeneAnnot

• Ferrari F., Bortoluzzi S., Coppe A., Sirota A., Safran M., Shmoish M., Ferrari S., Lancet D., Danieli G.A., Bicciato S. Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics 8(1):446 (2007)

• Chalifa-Caspi, V., Yanai, I., Ophir, R., Rosen, N., Shmoish, M., Benjamin-Rodrig, H., Iny Stein, T., Shmueli, O., Safran, M. and Lancet, D. GeneAnnot: Comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes. Bioinformatics 20, 9: 1457-1458 (2004)

• Chalifa-Caspi, V., Shmueli, O., Benjamin-Rodrig, H., Rosen, N., Shmoish, M., Yanai, I., Ophir, R., Kats, P., Safran, M. and Lancet, D. GeneAnnot: Interfacing GeneCards with high throughput gene expression compendia. Briefings in Bioinformatics 4, 4 (2003).

• Chalifa-Caspi, V., Yanai, I., Ophir, R., Shmoish,M., Benjamin-Rodrig, H., Rosen, N., Kats, P., Safran, M., Shmueli, O., and Lancet, D. GeneAnnot: Annotation of high-density oligunocleotide arrays and their linking with GeneCards. Poster Abstract at ISMB 2003 .

GeneNote work presented in GeneCards

• Safran, M., Chalifa-Caspi, V., Shmueli, O., Rosen, N., Benjamin-Rodrig, H., Ophir, R., Yanai, I., Shmoish, M., and Lancet, D. The GeneCards Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot. Proceedings of the IEEE Computer Science Bioinformatics Conference CSB2003, (2003) ( Poster Abstract at CSB2003 ).

• Safran, M., Chalifa-Caspi, V., Shmueli, O., Olender, T., Lapidot, M., Rosen, N., Shmoish, M., Peter, Y., Glusman, G., Feldmesser, E., Adato, A., Peter, I., Khen, M., Atarot, T., Groner, Y., and Lancet, D. Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Research 31,1:142-146 (2003).